Geniquest Examples

Examples Index ...
Confluence Notes

Run Examples

example jnlp jnlp Date of last change otml file most recent revision
GENIQUEST-final-part-I learner author Sun, 28 Mar 2010 01:37:53 GMT GENIQUEST-final-part-I.otml 22249
GENIQUEST-intermediate-investigation learner author Wed, 20 May 2009 03:07:47 GMT GENIQUEST-intermediate-investigation.otml 18931
GENIQUEST-middle-investigation-edit2 learner author Thu, 02 Apr 2009 17:31:54 GMT GENIQUEST-middle-investigation-edit2.otml 17925
GENIQUEST-middle-investigation learner author Wed, 01 Apr 2009 06:00:08 GMT GENIQUEST-middle-investigation.otml 17871
GENIQUEST-part-III-clean learner author Thu, 23 Apr 2009 21:57:14 GMT GENIQUEST-part-III-clean.otml 18375
GENIQUEST-part-III learner author Sat, 04 Apr 2009 08:59:34 GMT GENIQUEST-part-III.otml 17987
GENIQUEST-pilot-intro-plates-clean learner author Fri, 31 May 2013 17:03:58 GMT GENIQUEST-pilot-intro-plates-clean.otml 26638
GENIQUEST-pilot-intro-plates learner author Fri, 03 Apr 2009 23:08:32 GMT GENIQUEST-pilot-intro-plates.otml 17978
GENIQUEST-pilot-intro-platestest3 learner author Wed, 01 Apr 2009 01:38:45 GMT GENIQUEST-pilot-intro-platestest3.otml 17870
GENIQUEST-pilot-intro learner author Wed, 10 Dec 2008 12:59:27 GMT GENIQUEST-pilot-intro.otml 16490
GENIQUEST-pilot-rev1 learner author Wed, 10 Dec 2008 07:55:33 GMT GENIQUEST-pilot-rev1.otml 16482
GENIQUEST-pilot-rev2 learner author Wed, 10 Dec 2008 07:40:51 GMT GENIQUEST-pilot-rev2.otml 16481
GENIQUEST-pilot learner author Mon, 15 Dec 2008 15:10:32 GMT GENIQUEST-pilot.otml 16530
Geniquest-full-beta learner author Fri, 08 Aug 2008 19:18:56 GMT Geniquest-full-beta.otml 14789
chromosome-dna-view learner author Thu, 20 Nov 2008 21:18:27 GMT chromosome-dna-view.otml 16352
chromosome-meiosis-view learner author Thu, 20 Nov 2008 21:18:27 GMT chromosome-meiosis-view.otml 16352
crossover-coloring-example learner author Tue, 17 Mar 2009 19:31:34 GMT crossover-coloring-example.otml 17604
gbrowse-link-opening-example learner author Wed, 01 Apr 2009 20:02:43 GMT gbrowse-link-opening-example.otml 17906
gq-master-authoring learner author Mon, 09 Feb 2009 16:53:53 GMT gq-master-authoring.otml 17004
gq_p6 learner author Tue, 31 Mar 2009 12:06:15 GMT gq_p6.otml 17831
multi-page-GQ-activity-1 learner author Thu, 20 Nov 2008 21:18:27 GMT multi-page-GQ-activity-1.otml 16352
multi-page-GQ-activity-2 learner author Thu, 20 Nov 2008 21:18:27 GMT multi-page-GQ-activity-2.otml 16352
ruby_dragon_test_button learner author Thu, 20 Nov 2008 21:18:27 GMT ruby_dragon_test_button.otml 16352
ruby_erb_dragon_test learner author Thu, 20 Nov 2008 21:18:27 GMT ruby_erb_dragon_test.otml 16352
simple-breed-offspring-view learner author Thu, 20 Nov 2008 21:18:27 GMT simple-breed-offspring-view.otml 16352
simple-chromosome-phenotype-view learner author Thu, 20 Nov 2008 21:18:27 GMT simple-chromosome-phenotype-view.otml 16352
simple-chromosome-zoom-view learner author Thu, 20 Nov 2008 21:18:27 GMT simple-chromosome-zoom-view.otml 16352
simple-meiosis-screen learner author Thu, 20 Nov 2008 21:18:27 GMT simple-meiosis-screen.otml 16352
simple-pedigree-view learner author Thu, 20 Nov 2008 21:18:27 GMT simple-pedigree-view.otml 16352
simple-qtl-example learner author Mon, 27 Oct 2008 16:28:54 GMT simple-qtl-example.otml 16056
simple-qtl-interactive-graph learner author Tue, 24 Feb 2009 18:28:04 GMT simple-qtl-interactive-graph.otml 17322
test-beta-authoring learner author Thu, 20 Nov 2008 21:18:27 GMT test-beta-authoring.otml 16352
test_beta_qtl_onechromo_bigpeak learner author Mon, 03 Nov 2008 19:28:16 GMT test_beta_qtl_onechromo_bigpeak.otml 16105

MacOS X Java Web Start Problem

If you are using Java 1.5 on MacOS 10.4 or 10.5 you will almost certainly need to run some version of the fixes described on our How to fix Mac OS X WebStart bugs, once on each computer you run the Concord SAIL-OTrunk activities on. If you update Java on your Macintosh you will need to fix this problem again. The problem appears on Mac OS X computers when starting a Java Web Start program you have run before -- if a jar file needs to be updated the download process will freeze without completing.


Description of the difference between running an activity in learner mode and author mode

Running an OTrunk example in learner mode uses the default view mode which assumes a learner. In addition if you use the File menu to save the otml only the differences between the activity otml and the changes will be saved. The otml saved is the learner difference otml and is often much smaller than activty otml.

Running an OTrunk example in author mode sets the following jnlp properties:

Setting otrunk.view.author to true causes the entire OTrunk state to be saved as otml when a File save is performed. Setting otrunk.view.mode to authoring is used in the view system to enable authoring affordances in the views. Many examples do not have special authoring views. The Basic Example: document-edit.otml does have both authoring and student view modes.


All Files

Biologica-OTQTLSimulation.launch
Dragon-test-TM-Project.tmproj
GENIQUEST-final-part-I.otml
GENIQUEST-intermediate-investigation.otml
GENIQUEST-middle-investigation-edit2.otml
GENIQUEST-middle-investigation.otml
GENIQUEST-part-III-clean.otml
GENIQUEST-part-III.otml
GENIQUEST-pilot-intro-plates-clean.otml
GENIQUEST-pilot-intro-plates.otml
GENIQUEST-pilot-intro-platestest3.otml
GENIQUEST-pilot-intro.otml
GENIQUEST-pilot-rev1.otml
GENIQUEST-pilot-rev2.otml
GENIQUEST-pilot.otml
Geniquest-full-beta.otml
Installer
OTViewer_Document-Edit_GC1.launch
OTViewer_Document-Edit_GC2.launch
OTViewer_Geniquest (Breed Offspring Screen).launch
OTViewer_Geniquest (Chromosome DNA Screen).launch
OTViewer_Geniquest (Chromosome Meiosis Screen).launch
OTViewer_Geniquest (Chromosome Screen).launch
OTViewer_Geniquest (Chromosome Zoom Screen).launch
OTViewer_Geniquest (Meiosis Screen).launch
OTViewer_Geniquest (Pedigree Screen).launch
OTViewer_Geniquest (test beta).launch
Pilot
chromosome-dna-view.otml
chromosome-meiosis-view.otml
crossover-coloring-example.otml
css
gbrowse-link-opening-example.otml
gq-master-authoring.otml
gq_p6.otml
images
imports
index.html
multi-page-GQ-activity-1.otml
multi-page-GQ-activity-2.otml
ot-index.html
ruby_dragon_test_button.otml
ruby_erb_dragon_test.otml
scripts
simple-breed-offspring-view.otml
simple-chromosome-phenotype-view.otml
simple-chromosome-zoom-view.otml
simple-meiosis-screen.otml
simple-pedigree-view.otml
simple-qtl-example.otml
simple-qtl-interactive-graph.otml
test-beta-authoring.otml
test_beta_qtl_onechromo_bigpeak.otml

The jnlp urls were constructed using the following template:
http://saildataservice.concord.org/2/offering/144/jnlp/540/view?sailotrunk.otmlurl=%otml_url%&sailotrunk.hidetree=false
You can change this string by putting it in a file named: jnlp_url.tmpl in this directory